 Li H, Ji Z, Paulo JA, Gygi SP, and Rapoport TA. (2024) Bidirectional substrate shuttling between the 26S proteasome and the Cdc48 ATPase promotes protein degradation. Molecular Cell 84(7):1290-1303.
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 Ji Z*#, Li H*, Peterle D, Paulo JA, Ficarro SB, Wales TE, Marto JA, Gygi SP, Engen JR, and Rapoport TA#. (2022) Translocation of polyubiquitinated substrate through the hexameric Cdc48 ATPase. Molecular Cell 82(3): 570-584.
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 Gao H, Li F, Ji Z, Shi Z, Li Y, Yu H. (2022) Cryo-EM Structures of Human p97 Double Hexamer Capture Potentiated ATPase-competent State. Cell Discovery. 8(1): 19.
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 Twomey EC*, Ji Z*, Wales TE, Bodnar NO, Ficarro SB, Marto JA, Engen JR, and Rapoport TA. (2019) Substrate processing by the Cdc48 ATPase complex is initiated by ubiquitin unfolding. Science 365(6452): eaax1033.
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 Bodnar NO, Kim KH, Ji Z, Wales TE, Svetlov V, Nudler E, Engen JR, Walz T, and Rapoport TA. (2018) Structure of the Cdc48 ATPase with its ubiquitin-binding cofactor Ufd1-Npl4. Nature Structural & Molecular Biology. 25(7): 616–622.
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 Li F, Kim H, Ji Z, Zhang T, Chen B, Ge Y, Hu Y, Feng X, Han X, Xu H, Zhang Y, Yu H, Liu D, Ma W, and Songyang Z. (2018) The BUB3-BUB1 Complex Promotes Telomere DNA Replication. Molecular Cell 70(3): 395-407.
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 Ji Z*, Gao H*, Jia L, Li B, and Yu H. (2017) A sequential multi-target Mps1 phosphorylation cascade promotes spindle checkpoint signaling. eLife 6: e22513.
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 Ji Z, Gao H, and Yu H. (2015) Kinetochore attachment sensed by competitive Mps1 and microtubule binding to Ndc80C. Science 348(6240): 1260–1264.
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 Ji Z and Yu H. (2014) A Protective Chaperone for the Kinetochore Adaptor Bub3. Developmental Cell 28(3): 223–224.
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 Wu N, Kong X, Ji Z, Zeng W, Potts PR, Yokomori K, and Yu H. (2012) Scc1 sumoylation by Mms21 promotes sister chromatid recombination through counteracting Wapl. Genes & Development 26(13): 1473–1485.
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